JULES VANARET
Contact
jules.vanaret 'at' univ-amu.fr
jules.vanaret 'at' univ-amu.fr
Biography
2021 - now PhD student under the supervision of Philippe Roudot (I2M) and Sham Tlili (IBDM)
2018-2021 Engineering degree in Computer Science, Centrale Lyon
2017-2021 Masters in Physics, Ecole Normale Supérieure Lyon
Current work
I work on tracking cells in embryonic organoids undergoing symmetry breaking. I mainly use Deep Learning techniques for the segmentation of nuclei and Bayesian tracking schemes based on Markovian state space models.
Publications
A detector-independent quality score for cell segmentation without ground truth in 3D live fluorescence microscopy. Jules Vanaret, Victoria Dupuis, Pierre-François Lenne, Frédéric Richard, Sham Tlili, and Philippe Roudot. IEEE Journal of Selected Topics in Quantum Electronics Accepted, available on HAL
Latent space of a small genetic network: Geometry of dynamics and information. Rabea Seyboldt, Juliette Lavoie, Adrien Henry, Jules Vanaret, Mariela D. Petkova, Thomas Gregor, and Paul François. PNAS DOI:10.1073/pnas.2113651119